broad institute logo > Data > Olive > Aphanomyces astaci APO3.2

Aphanomyces astaci APO3.2

« Previous · Version 2 · Next »

Organism Information

Description Aphanomyces astaci APO3
Web Publication Date 2013-12-19
Genbank BioProject 187372
Taxonomy ID 112090

Assembly Information

Assembly Size 75844385 nt
Sequencing Technology Illumina
Coverage 107x
Scaffold count 0
Contig count 0

Annotation Information

Protein-coding Gene Count 19119

Structural Overview

Length Cov GC
Genic 35953869 nt 46.33% 53.07%
Intergenic 40704524 nt 53.67% 45.06%
Exonic 42588983 nt 35.34% 56.74%
Intronic 14123527 nt 10.33% 39.90%
Protein-coding 36504543 nt 33.01% 57.42%
5' UTR 1643906 nt 1.43% 52.86%
3' UTR 4440534 nt 3.57% 49.88%

Length Distribution

Min Median Mean N50 Max
Gene 93 nt 1334 nt 1880.53 nt 2583 nt 39426 nt
mRNA 93 nt 1313 nt 1621.88 nt 2046 nt 38916 nt
CDS 93 nt 1068 nt 1390.17 nt 1785 nt 38742 nt
Exon 3 nt 191 nt 329.48 nt 540 nt 27075 nt
Intron 11 nt 62 nt 137.12 nt 332 nt 14958 nt
5' UTR 1 nt 38 nt 90.70 nt 257 nt 2883 nt
3' UTR 1 nt 114 nt 231.91 nt 485 nt 4483 nt
Intergenic Distance 1 nt 609 nt 2219.20 nt 8205 nt 74805 nt

Citation

Please cite these data as:
"Aphanomyces WGS initiative, Broad Institute (broadinstitute.org)"