Aphanomyces astaci APO3.2
Organism Information
| Description |
Aphanomyces astaci APO3 |
| Web Publication Date |
2013-12-19 |
| Genbank BioProject |
187372
|
| Taxonomy ID |
112090
|
Assembly Information
| Assembly Size |
75844385 nt |
| Sequencing Technology |
Illumina |
| Coverage |
107x |
| Scaffold count |
0 |
| Contig count |
0 |
Annotation Information
| Protein-coding Gene Count |
19119 |
Structural Overview
|
Length |
Cov |
GC |
| Genic |
35953869 nt |
46.33% |
53.07% |
| Intergenic |
40704524 nt |
53.67% |
45.06% |
| Exonic |
42588983 nt |
35.34% |
56.74% |
| Intronic |
14123527 nt |
10.33% |
39.90% |
| Protein-coding |
36504543 nt |
33.01% |
57.42% |
| 5' UTR |
1643906 nt |
1.43% |
52.86% |
| 3' UTR |
4440534 nt |
3.57% |
49.88% |
Length Distribution
|
Min |
Median |
Mean |
N50 |
Max |
| Gene |
93 nt |
1334 nt |
1880.53 nt |
2583 nt |
39426 nt |
| mRNA |
93 nt |
1313 nt |
1621.88 nt |
2046 nt |
38916 nt |
| CDS |
93 nt |
1068 nt |
1390.17 nt |
1785 nt |
38742 nt |
| Exon |
3 nt |
191 nt |
329.48 nt |
540 nt |
27075 nt |
| Intron |
11 nt |
62 nt |
137.12 nt |
332 nt |
14958 nt |
| 5' UTR |
1 nt |
38 nt |
90.70 nt |
257 nt |
2883 nt |
| 3' UTR |
1 nt |
114 nt |
231.91 nt |
485 nt |
4483 nt |
| Intergenic Distance |
1 nt |
609 nt |
2219.20 nt |
8205 nt |
74805 nt |
Citation
Please cite these data as:
"Aphanomyces WGS initiative, Broad Institute (broadinstitute.org)"
