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Aphanomyces invadans 9901.2

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Organism Information

Description Aphanomyces invadans 9901
Web Publication Date 2013-12-19
Genbank BioProject 188082
Taxonomy ID 157072

Assembly Information

Assembly Size 71402472 nt
Sequencing Technology Illumina
Coverage 138x
Scaffold count 0
Contig count 0

Annotation Information

Protein-coding Gene Count 15248

Structural Overview

Length Cov GC
Genic 28429794 nt 38.10% 56.36%
Intergenic 44200756 nt 61.90% 50.12%
Exonic 37732706 nt 33.17% 56.86%
Intronic 5904514 nt 4.51% 52.69%
Protein-coding 30915762 nt 30.25% 57.15%
5' UTR 1609882 nt 1.51% 56.60%
3' UTR 5207062 nt 4.17% 54.66%

Length Distribution

Min Median Mean N50 Max
Gene 96 nt 1440 nt 1864.49 nt 2425 nt 38775 nt
mRNA 93 nt 1474 nt 1812.68 nt 2267 nt 38068 nt
CDS 93 nt 1143 nt 1485.19 nt 1893 nt 38043 nt
Exon 3 nt 193 nt 345.53 nt 583 nt 26036 nt
Intron 21 nt 53 nt 66.80 nt 57 nt 13621 nt
5' UTR 1 nt 40 nt 100.85 nt 305 nt 3863 nt
3' UTR 1 nt 158 nt 311.30 nt 629 nt 10699 nt
Intergenic Distance 1 nt 489 nt 3301.27 nt 19070 nt 103152 nt

Citation

Please cite these data as:
"Aphanomyces WGS initiative, Broad Institute (broadinstitute.org)"